m-thesis-introduction/simulations/airshower_beacon_simulation/generate_beacon.py

#!/usr/bin/env python3

import numpy as np
import json
import h5py
import os.path as path

from copy import deepcopy as copy

from earsim import REvent, Antenna

import lib

tx_fname = 'tx.json'
antennas_fname = 'antennas.hdf5'

def write_tx_file(fname, tx, f_beacon):
    with open(fname, 'w') as fp:
        return json.dump(
                dict(
                    f_beacon=f_beacon,
                    tx=dict(
                        x=tx.x,
                        y=tx.y,
                        z=tx.z,
                        name=tx.name
                        )
                    ),
                fp
                )

def read_tx_file(fname):
    with open(fname, 'r') as fp:
        data = json.load(fp)

    f_beacon = data['f_beacon']
    tx = Antenna(**data['tx'])

    return tx, f_beacon

def read_beacon_hdf5(fname):
    with h5py.File(fname, 'r') as h5:
        tx_attrs = h5['tx'].attrs
        f_beacon = tx_attrs.get('f_beacon')

        mydict = { k:tx_attrs.get(k) for k in ['x', 'y', 'z', 'name'] }
        tx = Antenna(**mydict)

        print(f_beacon, tx)

        antennas = []
        for k, ant in h5['antennas'].items():
            mydict = { k:ant.attrs.get(k) for k in ['x', 'y', 'z', 'name'] }
            antenna = Antenna(**mydict)
            antenna.t = ant['traces'][0]
            antenna.beacon = ant['traces'][1]

            antennas.append(antenna)

    return f_beacon, tx, antennas

def init_antenna_hdf5(fname, tx = None, f_beacon = None):
    with h5py.File(fname, 'w') as fp:
        if tx is not None or f_beacon is not None:
            tx_group = fp.create_group('tx')
            tx_attrs = tx_group.attrs

            if f_beacon is not None:
                tx_attrs['f_beacon'] = f_beacon

            if tx is not None:
                tx_attrs['x'] = tx.x
                tx_attrs['y'] = tx.y
                tx_attrs['z'] = tx.z
                tx_attrs['name'] = tx.name

    return fname

def append_antenna_hdf5(fname, antenna, datasets = [], overwrite=False):
    with h5py.File(fname, 'a') as fp:
        if 'antennas' not in fp.keys():
            group = fp.create_group('antennas')
        else:
            group = fp['antennas']

        if overwrite:
            raise NotImplementedError

        ant_group = group.create_group(antenna.name)
        ant_attrs = ant_group.attrs
        ant_attrs['x'] = antenna.x
        ant_attrs['y'] = antenna.y
        ant_attrs['z'] = antenna.z
        ant_attrs['name'] = antenna.name

        dset = ant_group.create_dataset('traces', (len(datasets)+1, len(antenna.t)), dtype='f')

        dset[0] = antenna.t
        for i, mydset in enumerate(datasets,1):
            dset[i] = mydset

def BeaconedREvent(fname, fname_beacon=None, beacon_amplitude=(1,0,0)):

    if fname_beacon is None:
        fname_beacon = path.join(path.dirname(fname), beacon_fname)

    f_beacon, tx, antennas = read_beacon_hdf5(fname_beacon)

    ev = REvent(fname)
    ev.tx = tx
    ev.tx.f_beacon = f_beacon

    merge_beacon_into_REvent(antennas, ev, beacon_amplitude=beacon_amplitude)
    
    return ev
    
def merge_beacon_into_REvent(beacons, ev, beacon_amplitude=(1,0,0)):
    assert len(beacons) == len(ev.antennas)

    if not hasattr(beacon_amplitude, '__len__'):
        beacon_amplitude = np.repeat(beacon_amplitude,3)

    assert len(beacon_amplitude) == 3

    for i, beacon in enumerate(beacons):
        ant = ev.antennas[i]
        assert len(beacon.t) == len(ant.t)

        # copy original Efields
        ev.antennas[i].orig_Ex = copy(ev.antennas[i].Ex)
        ev.antennas[i].orig_Ey = copy(ev.antennas[i].Ey)
        ev.antennas[i].orig_Ez = copy(ev.antennas[i].Ez)

        ev.antennas[i].beacon = beacon.beacon
        if beacon_amplitude[0] != 0:
            ev.antennas[i].Ex += beacon_amplitude[0]*beacon.beacon
        if beacon_amplitude[1] != 0:
            ev.antennas[i].Ey += beacon_amplitude[1]*beacon.beacon
        if beacon_amplitude[2] != 0:
            ev.antennas[i].Ez += beacon_amplitude[2]*beacon.beacon

if __name__ == "__main__":
    from os import path

    remake_tx = False

    fname = "ZH_airshower/mysim.sry"
    tx = Antenna(x=-500,y=0,z=0,name='tx')
    f_beacon = 50e-3 # GHz

    ####
    fname_dir = path.dirname(fname)
    tx_fname = path.join(fname_dir, tx_fname)
    antennas_fname = path.join(fname_dir, antennas_fname)

    if not path.isfile(tx_fname) or remake_tx:
        write_tx_file(tx_fname, tx, f_beacon)
    else:
        tx, f_beacon = read_tx_file(tx_fname)

    # read in antennas
    ev = REvent(fname)
    N_antennas = len(ev.antennas)

    # initialize hdf5 file
    init_antenna_hdf5(antennas_fname, tx, f_beacon)

    # make beacon per antenna
    for i, antenna in enumerate(ev.antennas):
        beacon = lib.beacon_from(tx, antenna, f_beacon, antenna.t)

        E = [antenna.Ex, antenna.Ey, antenna.Ez ]

        # add to relevant polarisation
        E[0] += beacon

        append_antenna_hdf5( antennas_fname, antenna, (E[0], E[1], E[2] ))

    print("Antenna HDF5 file written as " + str(antennas_fname))