Merge branch 'rit-joblib' into main

simulations/airshower_beacon_simulation/da_reconstruction.py

@@ -11,6 +11,7 @@ from mpl_toolkits.mplot3d import Axes3D # required for projection='3d' on old ma
 import numpy as np
 from os import path
 import pickle
+import joblib
 
 from earsim import REvent
 from atmocal import AtmoCal
@@ -73,7 +74,8 @@ if __name__ == "__main__":
         ev.antennas[i].t += total_clock_time
 
     N_X, Xlow, Xhigh = 23, 100, 1200
-    res = rit.reconstruction(ev, outfile=fig_subdir+'/fig.pdf', slice_outdir=fig_subdir+'/', Xlow=Xlow, N_X=N_X, Xhigh=Xhigh)
+    with joblib.parallel_backend("loky"):
+        res = rit.reconstruction(ev, outfile=fig_subdir+'/fig.pdf', slice_outdir=fig_subdir+'/', Xlow=Xlow, N_X=N_X, Xhigh=Xhigh)
 
     ## Save a pickle
     with open(pickle_fname, 'wb') as fp:

simulations/airshower_beacon_simulation/lib/rit.py

@@ -10,6 +10,12 @@ from scipy.optimize import curve_fit,minimize
 import pandas as pd
 import os
 
+try:
+    from joblib import Parallel, delayed
+except:
+    Parallel = None
+    delayed = lambda x: x
+
 plt.rcParams.update({'font.size': 16})
 
 atm = AtmoCal()
@@ -79,26 +85,28 @@ def shower_axis_slice(e,Xb=200,Xe=1200,dX=2,zgr=0):
     p = np.asanyarray(p)
     return ds,Xs,locs,p
 
-def shower_plane_slice(e,X=750.,Nx=10,Ny=10,wx=1e3,wy=1e3,xoff=0,yoff=0,zgr=0):
+def shower_plane_slice(e,X=750.,Nx=10,Ny=10,wx=1e3,wy=1e3,xoff=0,yoff=0,zgr=0,n_jobs=None):
     zgr = zgr + e.core[2]
     dX = atm.distance_to_slant_depth(np.deg2rad(e.zenith),X,zgr)
     x = np.linspace(-wx,wx,Nx)
     y = np.linspace(-wy,wy,Ny)
-    xx = []
+
-    yy = []
+    def loop_func(x_, y_, xoff=xoff, yoff=yoff):
-    p = []
-    locs = []
-    for x_ in x:
-        for y_ in y:
             loc = (x_+xoff)* e.uAxB + (y_+yoff)*e.uAxAxB + dX *e.uA
             locs.append(loc)
             P,t_,pulses_,wav,twav = pow_and_time(loc,e)
-            xx.append(x_+xoff)
+
-            yy.append(y_+yoff)
+            return x_+xoff, y_+yoff, P, locs
-            p.append(P)
+
-    xx = np.asarray(xx)
+    res = ( delayed(loop_func)(x_, y_) for x_ in x for y_ in y)
-    yy = np.asarray(yy)
+
-    p = np.asanyarray(p)
+    if Parallel:
+        #if n_jobs is None change with `with parallel_backend`
+        res = Parallel(n_jobs=n_jobs)(res)
+
+    # unpack loop results
+    xx, yy, p, locs = zip(*res)
+
     return xx,yy,p,locs[np.argmax(p)]
 
 def slice_figure(e,X,xx,yy,p,mode='horizontal'):
@@ -146,17 +154,16 @@ def dist_to_line_sum(param,data,weights):
     # print('%.2e %.2e %.2e %.2e %.2e'%(x0,y0,theta,phi,dsum))
     return dsum/len(data)
 
-def get_axis_points(e,savefig=True,path="",zgr=0,Xlow=300, Xhigh=1000, N_X=15):
+def get_axis_points(e,savefig=True,path="",zgr=0,Xlow=300, Xhigh=1000, N_X=15, n_jobs=None):
-    axis_points = []
-    max_vals = []
     Xsteps = np.linspace(Xlow, Xhigh, N_X)
     zgr=zgr+e.core[2] #not exact
     dXref = atm.distance_to_slant_depth(np.deg2rad(e.zenith),750,zgr)
     scale2d = dXref*np.tan(np.deg2rad(2.))
     scale4d = dXref*np.tan(np.deg2rad(4.))
     scale0_2d=dXref*np.tan(np.deg2rad(0.2))
-    for X in Xsteps:
+
-        print(X)
+    def loop_func(X):
+        print("Starting", X)
         x,y,p,loc_max = shower_plane_slice(e,X,21,21,scale2d,scale2d)
         if savefig:
             fig,axs = slice_figure(e,X,x,y,p,'sp')
@@ -175,8 +182,18 @@ def get_axis_points(e,savefig=True,path="",zgr=0,Xlow=300, Xhigh=1000, N_X=15):
             fig,axs = slice_figure(e,X,x,y,p,'sp')
             fig.savefig(path+'X%d_b.pdf'%(X))
             plt.close(fig)
-        max_vals.append(np.max(p))
+
-        axis_points.append(loc_max)
+        print("Finished", X)
+        return np.max(p), loc_max
+
+    res = (delayed(loop_func)(X) for X in Xsteps)
+
+    if Parallel:
+        #if n_jobs is None change with `with parallel_backend`
+        res = Parallel(n_jobs=n_jobs)(res)
+
+    # unpack loop results
+    max_vals, axis_points = zip(*res)
 
     return Xsteps,axis_points,max_vals