ZH: improve antenna matrix solving

simulations/airshower_beacon_simulation/bc_baseline_phase_deltas.py

@@ -22,12 +22,12 @@ if __name__ == "__main__":
     fname = "ZH_airshower/mysim.sry"
     c_light = 3e8*1e-9
     show_plots = True
-    ref_ant_id = None # leave None for all baselines
+    ref_ant_id = 50 # leave None for all baselines
 
     ####
     fname_dir = path.dirname(fname)
     antennas_fname = path.join(fname_dir, beacon.antennas_fname)
-    time_diffs_fname = 'time_diffs.hdf5' if not True else antennas_fname
+    time_diffs_fname = 'time_diffs.hdf5' if False else antennas_fname
 
     fig_dir = "./figures" # set None to disable saving
 
@@ -111,10 +111,10 @@ if __name__ == "__main__":
             if plot_residuals:
                 phase_residuals = lib.phase_mod(phase_diffs[:,1] - my_phase_diffs)
 
-                axs[0].set_title("Difference between Measured and Actual phase difference for Baseline (i,j)")
+                axs[0].set_title("Difference between Measured and Actual phase difference\n for Baseline (i,j" + ( '='+str(ref_ant_id) if ref_ant_id is not None else None) + ')')
                 axs[1].set_xlabel("Baseline Phase Residual $\\varphi_{ij_{meas}} - \\varphi_{ij_{true}}$ [rad]")
             else:
-                axs[0].set_title("Comparison Measured and Actual phase difference for Baseline (i,j)")
+                axs[0].set_title("Comparison Measured and Actual phase difference\n for Baseline (i,j" + ( '='+str(ref_ant_id) if ref_ant_id is not None else None) + ')')
                 axs[1].set_xlabel("Baseline Phase $\\varphi_{ij}$ [rad]")
 
             i=0
@@ -139,7 +139,7 @@ if __name__ == "__main__":
             if fig_dir:
                 extra_name = "measured"
                 if plot_residuals:
-                    extra_name = "differences"
+                    extra_name = "residuals"
                 fig.savefig(path.join(fig_dir, __file__ + f".{extra_name}.F{freq_name}.pdf"))
 
     if show_plots:

simulations/airshower_beacon_simulation/bd_antenna_phase_deltas.py

@@ -14,6 +14,11 @@ if __name__ == "__main__":
     from os import path
     import sys
 
+    import os
+    import matplotlib
+    if os.name == 'posix' and "DISPLAY" not in os.environ:
+        matplotlib.use('Agg')
+
     fname = "ZH_airshower/mysim.sry"
 
     show_plots = True
@@ -22,35 +27,144 @@ if __name__ == "__main__":
     ####
     fname_dir = path.dirname(fname)
     antennas_fname = path.join(fname_dir, beacon.antennas_fname)
-    time_diffs_fname = antennas_fname
+    time_diffs_fname = 'time_diffs.hdf5' if False else antennas_fname
+    fig_dir = "./figures" # set None to disable saving
 
-    basenames, time_diffs, f_beacon, true_phase_diffs, k_periods = beacon.read_baseline_time_diffs_hdf5(time_diffs_fname)
+    basenames, time_diffs, f_beacons, true_phase_diffs, k_periods = beacon.read_baseline_time_diffs_hdf5(time_diffs_fname)
 
     f_beacon, tx, antennas = beacon.read_beacon_hdf5(antennas_fname)
 
+    # TODO: allow multiple frequencies
+    if (f_beacon != f_beacons).any():
+        raise NotImplementedError
+
+    N_base = len(basenames)
+    N_ant = len(antennas)
+
+    # reshape time_diffs into N_ant x N_ant array
+    sigma_phase_matrix = np.full( (N_ant, N_ant), np.nan, dtype=float)
+    #sigma_phase_matrix = np.arange(0, N_ant**2, dtype=float).reshape( (N_ant,N_ant))
+
+    name2idx = lambda name: int(name)-1
+    for i, b in enumerate(basenames):
+        idx = (name2idx(b[0]), name2idx(b[1]))
+
+        if idx[0] == idx[1]:
+            pass
+
+        sigma_phase_matrix[(idx[0], idx[1])] = true_phase_diffs[i]
+        sigma_phase_matrix[(idx[1], idx[0])] = true_phase_diffs[i]
+
+    # for each row j subtract the 0,j element from the whole row
+    # and apply phase_mod
+    first_row = sigma_phase_matrix[0]
+
+    sigma_phase_matrix = sigma_phase_matrix - first_row[:,np.newaxis]
+    sigma_phase_matrix = lib.phase_mod(sigma_phase_matrix)
+
+
+    # Except for the first row, these are all separate measurements
+    # Condense into phase offset per antenna
+    if True: # do not use the first row
+        my_mask = np.arange(1, len(sigma_phase_matrix), dtype=int)
+    else:
+        my_mask = np.arange(0, len(sigma_phase_matrix), dtype=int)
+
+    mean_sigma_phase = np.nanmean(sigma_phase_matrix[my_mask], axis=0)
+    std_sigma_phase  = np.nanstd( sigma_phase_matrix[my_mask], axis=0)
+
+    # write into antenna hdf5
+    with h5py.File(antennas_fname, 'a') as fp:
+        group = fp['antennas']
+
+        freq_name = None
+        for i, ant in enumerate(antennas):
+            h5ant = group[ant.name]
+
+            h5beacon_info = h5ant['beacon_info']
+
+            # find out freq_name
+            if freq_name is None:
+                freq_name = [ k for k in h5beacon_info.keys() if np.isclose(h5beacon_info[k].attrs['freq'], f_beacon)][0]
+
+            h5attrs = h5beacon_info[freq_name].attrs
+
+            idx = name2idx(ant.name)
+            h5attrs['sigma_phase_mean'] = mean_sigma_phase[idx]
+            h5attrs['sigma_phase_std']  =  std_sigma_phase[idx]
+
+
+    ##############################
+    # Compare actual time shifts #
+    ##############################
     antenna_time_shifts = { a.name: a.attrs['clock_offset'] for a in antennas }
 
+    if True:
+        # show means and std
+        fig, axs = plt.subplots(1,2, sharey=True)
+        axs[0].set_title("")
+        axs[0].set_xlabel("Antenna no.")
+        axs[0].set_ylabel("Antenna Phase $\\Delta_\\varphi$")
+        axs[1].set_xlabel("#")
+        if True:
+            forward = lambda x: x/(2*np.pi*f_beacon)
+            inverse = lambda x: 2*np.pi*x*f_beacon
+            secax = axs[1].secondary_yaxis('right', functions=(forward, inverse))
+            secax.set_ylabel('Time $\\Delta\\varphi/(2\\pi f_{beac})$ [ns]')
 
-    my_time_shifts = []
+        l = axs[0].errorbar(np.arange(N_ant), mean_sigma_phase, yerr=std_sigma_phase, marker='.', alpha=0.7)
+
+        axs[1].hist(mean_sigma_phase, bins='sqrt', density=False, orientation='horizontal', color=l[0].get_color(), histtype='step')
+
+        # Actual time shifts
+        if True:
+            actual_phase_shifts = [ -1*lib.phase_mod(2*np.pi*f_beacon*v) for k,v in antenna_time_shifts.items() ]
+            antenna_names = [int(k) for k,v in antenna_time_shifts.items() ]
+
+            # make sure to keep the same offset
+            if True:
+                phase_offset = mean_sigma_phase[0] - actual_phase_shifts[0]
+
+                actual_phase_shifts += phase_offset
+
+            l = axs[0].plot(antenna_names, actual_phase_shifts, ls='none', marker='3', alpha=0.8)
+
+            if True:
+                axs[1].hist(actual_phase_shifts, bins='sqrt', density=False, orientation='horizontal', ls='dashed', color=l[0].get_color(), histtype='step')
+
+        fig.tight_layout()
+        if fig_dir:
+            fig.savefig(path.join(fig_dir, __file__ + f".residuals.pdf"))
+
+    ##########################
+    ##########################
+    ##########################
+
+    actual_time_shifts = []
     for i,b in enumerate(basenames):
-        actual_time_shift = antenna_time_shifts[b[0]] - antenna_time_shifts[b[1]]
+        actual_time_shift = lib.phase_mod(lib.phase_mod(antenna_time_shifts[b[0]]*2*np.pi*f_beacon) - lib.phase_mod(antenna_time_shifts[b[1]]*2*np.pi*f_beacon))
-        my_time_shifts.append(actual_time_shift)
 
-        print(
+        actual_time_shifts.append(actual_time_shift)
-                f'B({b[0]}, {b[1]}):',
+
-                time_diffs[i],
+    # unpack mean_sigma_phase back into a list of time diffs
-                k_periods[i],
+    measured_time_diffs = []
-                'A', actual_time_shift
+    for i,b in enumerate(basenames):
-            )
+        time0, time1 = mean_sigma_phase[name2idx(b[0])], mean_sigma_phase[name2idx(b[1])]
+        measured_time_diffs.append(time1 - time0)
 
     # Make a plot
-    N = len(basenames)
+    if True:
-    fig, ax = plt.subplots()
+        fig, ax = plt.subplots()
-    ax.set_xlabel("Baseline combo")
+        ax.set_xlabel("Baseline no.")
-    ax.set_ylabel("[ns]")
+        ax.set_ylabel("$\\Delta t$[ns]")
-    ax.plot(np.arange(N), my_time_shifts, marker='+', label='actual time shifts')
+        if True: # indicate single beacon period span
-    ax.plot(np.arange(N), time_diffs, marker='x', label='calculated')
+            ax.plot((-1, -1), (0, 1/f_beacon), marker='3', ms=10, label='1/f_beacon')
+        ax.plot(np.arange(N_base), actual_time_shifts, marker='+', label='actual time shifts')
+        ax.plot(np.arange(N_base), measured_time_diffs, marker='x', label='calculated')
 
-    ax.legend()
+        ax.legend()
+        if fig_dir:
+            fig.savefig(path.join(fig_dir, __file__ + f".calculated_shifts.pdf"))
 
-    plt.show()
+    if show_plots:
+        plt.show()